}
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    • Tender For Low Depth Whole Genome Sequencing And Snp Variant Call, peechi-Kerala

    Kerala State Council For Science Technology And Environment has published Tender For Low Depth Whole Genome Sequencing And Snp Variant Call. Submission Date for this Tender is 13-03-2025. Laboratory Equipment Tenders in peechi Kerala. Bidders can get complete Tender details and download the document.




    Tender Notice

    47510743
    Tender For Low Depth Whole Genome Sequencing And Snp Variant Call
    Open Tender
    NCB
    Kerala
    Peechi
    13-03-2025

    Tender Details

    Tender For Low Depth Whole Genome Sequencing and SNP Variant Call- 1 Low Depth Whole Genome Sequencing 2 Project execution strategiesSamples 9 individual leaf samples of TeakInstrument Illumina or PacBio ONSO plaformApplication Low-depth genome sequencing of nine Teak samples and SNP variant calling. Sample quality control Qubit and AgaroseLibrary preparation Illumina/Pacbio library preparation KitNumber of Libraries9 Nos.Library validation and QCBA/Qubit Read length2X150 bp (PE sequencing)Sequencing modeHigh output Data generation per sample6 Gb per sample with Q30>85 to 90 % per sample Depth of sequencing per sample20X per sample SNP variant callingGATK4 Pipeline Deliverables 1. DNA QC report 2. Library preparation report 3. Fast QC report and Sequencing output4. Raw data (FastQ and Fasta format), is to be provided through FTP protocol, having read me file with the explanation. 5. SNP variant calling (Raw VCF, VCF for call and final VCF) and CSV report 6. A detailed report is to be submitted after completion of the experiment.

    Key Value

    Document Fees
    INR 400 /-
    EMD
    INR 1800.0 /-
    Tender Value
    INR 1.80 Lakhs /-
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